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GLAMM: Genome-Linked Application for Metabolic Maps
Bates, J., Chivian, D., & Arkin, A. (2011). GLAMM: Genome-Linked Application for Metabolic Maps. Nucleic Acids Research, (2011). doi:10.1093/nar/gkr433 - Report Number: LBNL-4757E
Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays
Jung, K. H., Dardick, C., Bartley, L. E., Cao, P. J., Phetsom, J., Canlas, P., … Ronald, P. C. (2008). Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy. Plos One, 3(10). Jung, Kh Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA USDA ARS, Appalachian Fruit Res Stat, Kearneysville, WV USA J Craig Venter Inst, Rockville, MD USA Iowa State Univ, Ctr Plant Genom, Ames, IA 50011 USA Pohang Univ Sci & Technol, Funct Genom Ctr, Pohang, South Korea Konkuk Univ, Coll Business Adm, Seoul, South Korea. doi:ARTN e3337 DOI 10.1371/journal.pone.0003337 - Report Number: LBNL-ir:156174
Combining multivariate analysis and monosaccharide composition modeling to identify plant cell wall variations by Fourier Transform Near Infrared spectroscopy
Smith-Moritz, A. M., Mawsheng, C., Lao, J., Sze-To, W. H., Heazlewood, J. L., Ronald, P., & Vega-Sanchez, M. E. (2011). Combining multivariate analysis and monosaccharide composition modeling to identify plant cell wall variations by Fourier Transform Near Infrared spectroscopy. Plant Methods, 7(26). Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, One Cyclotron Road MS 978-4101, Berkeley, CA 94720, USA. mevega-sanchez@lbl.gov. doi:1746-4811-7-26 [pii] 10.1186/1746-4811-7-26 - Report Number: LBNL-ir:156284
Impact of Ionic Liquid Pretreatment Conditions on Cellulose Crystalline Structure Using 1-Ethyl-3-methylimidazolium Acetate
Cheng, G., Varanasi, P., Arora, R., Stavila, V., Simmons, B. A., Kent, M. S., & Singh, S. (2012). Impact of Ionic Liquid Pretreatment Conditions on Cellulose Crystalline Structure Using 1-Ethyl-3-methylimidazolium Acetate. Journal of Physical Chemistry B, 116(33), 10049-10054. Singh, S Joint BioEnergy Inst, Emeryville, CA 94608 USA Joint BioEnergy Inst, Emeryville, CA 94608 USA Joint BioEnergy Inst, Emeryville, CA 94608 USA Sandia Natl Labs, Livermore, CA 94551 USA. doi:Doi 10.1021/Jp304538v - Report Number: LBNL-ir:156104
Interactions of endoglucanases with amorphous cellulose films resolved by neutron reflectometry and quartz crystal microbalance with dissipation monitoring
Cheng, G., Datta, S., Liu, Z., Wang, C., Murton, J. K., Brown, P. A., … Kent, M. S. (2012). Interactions of endoglucanases with amorphous cellulose films resolved by neutron reflectometry and quartz crystal microbalance with dissipation monitoring. Langmuir, 28(22), 8348-58. Joint BioEnergy Institute, Emeryville, California, USA. doi:10.1021/la300955q - Report Number: LBNL-ir:156101
Arabidopsis - a powerful model system for plant cell wall research
Liepman, A. H., Wightman, R., Geshi, N., Turner, S. R., & Scheller, H. V. (2010). Arabidopsis - a powerful model system for plant cell wall research. Plant Journal, 61(6), 1107-21. Biology Department, Eastern Michigan University, 316 Mark Jefferson Building, Ypsilanti, MI 48197, USA. aliepman@emich.edu. doi:TPJ4161 [pii] 10.1111/j.1365-313X.2010.04161.x - Report Number: LBNL-ir:156199
The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland
Schrimpf, S. P., Von Mering, C., Bendixen, E., Heazlewood, J. L., Bumann, D., Omenn, G., & Hengartner, M. O. (2012). The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland. Proteomics, 12(3), 346-50. Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland; Quantitative Model Organism Proteomics, University of Zurich, Zurich, Switzerland. doi:10.1002/pmic.201290015 - Report Number: LBNL-ir:156263
Regulation of (1,3;1,4)-β-D-glucan synthesis in developing endosperm of barley lys mutants
Christensen, U., & Scheller, H. V. (2012). Regulation of (1,3;1,4)-β-D-glucan synthesis in developing endosperm of barley lys mutants. Journal of Cereal Science, 55(1), 69-76. Department of Plant & Microbial Biology, University of California, 1 Cyclotron Rd, MS978R4121, Berkeley, CA 94720, USA. Tel.: þ1 510 486 7371; fax: þ1 510 486 4252. E-mail address: hscheller@lbl.gov (H.V. Scheller). doi:10.1016/j.jcs.2011.10.005 - Report Number: LBNL-ir:156115
Direct calibration of PICKY-designed microarrays
Chou, H. H., Trisiriroj, A., Park, S., Hsing, Y. I. C., Ronald, P. C., & Schnable, P. S. (2009). Direct calibration of PICKY-designed microarrays. BMC Bioinformatics, 10(347), 1-11. Chou, Hh Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA Iowa State Univ, Dept Comp Sci, Ames, IA 50011 USA Acad Sinica, Inst Plant & Microbial Biol, Taipei 11529, Taiwan Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA Iowa State Univ, Inst Plant Sci, Dept Agron, Ames, IA 50011 USA Iowa State Univ, Ctr Plant Genom, Ames, IA 50011 USA. doi:Artn 347 Doi 10.1186/1471-2105-10-347 - Report Number: LBNL-ir:156112
Effect of ionic liquid treatment on the structures of lignins in solutions
Cheng, G., Kent, M. S., He, L., Varanasi, P., Dibble, D., Arora, R., … Singh, S. (2012). Effect of ionic liquid treatment on the structures of lignins in solutions: molecular subunits released from lignin. Langmuir, 28(32), 11850-7. Deconstruction Division, Joint BioEnergy Institute, Emeryville, California 94608, USA. doi:10.1021/la300938b - Report Number: LBNL-ir:156102
The Rice Oligonucleotide Array Database
Cao, P., Jung, K. -H., Choi, D., Hwang, D., Zhu, J., & Ronald, P. C. (2012). The Rice Oligonucleotide Array Database: an atlas of rice gene expression. Rice, 5(1). doi:10.1186/1939-8433-5-17 - Report Number: LBNL-ir:156091
The HUPO initiative on Model Organism Proteomes, iMOP
Jones, A. M., Aebersold, R., Ahrens, C. H., Apweiler, R., Baerenfaller, K., Baker, M., … Zheng, X. (2012). The HUPO initiative on Model Organism Proteomes, iMOP. Proteomics, 12(3), 340-5. The Sainsbury Laboratory, Norwich Research Park, Norwich, UK. doi:10.1002/pmic.201290014 - Report Number: LBNL-ir:156167
Pectin Biosynthesis
Liwanag, A. J. M., Ebert, B., Verhertbruggen, Y., Rennie, E. A., Rautengarten, C., Oikawa, A., … Scheller, H. V. (2012). Pectin Biosynthesis: GALS1 (AT2g33570) in arabidopsis thaliana is a β-1,4-galactan β-1,4-galactosyltransferase. Plant Cell. - Report Number: LBNL-ir:156205
Toward tailored synthesis of functional polysaccharides in plants
Geshi, N., Petersen, B. L., & Scheller, H. V. (2010). Toward tailored synthesis of functional polysaccharides in plants. Foods for Health in the 21st Century, 1190, 50-57. Geshi, N Univ Copenhagen, Dept Plant Biol & Biotechnol, Fac Life Sci, VKR Res Ctr Proact Plants, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark Univ Copenhagen, Dept Plant Biol & Biotechnol, Fac Life Sci, VKR Res Ctr Proact Plants, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark Univ Copenhagen, Dept Plant Biol & Biotechnol, Fac Life Sci, VKR Res Ctr Proact Plants, DK-1871 Frederiksberg C, Denmark Univ Irhus, Fac Agr Sci, Irhus, Denmark Lawrence Berkeley Lab, Feedstocks Div, Joint BioEnergy Inst, Emeryville, CA USA. doi:10.1111/J.1749-6632.2009.05267.X - Report Number: LBNL-ir:156143
Plant cell walls throughout evolution
Sarkar, P., Bosneaga, E., & Auer, M. (2009). Plant cell walls throughout evolution: towards a molecular understanding of their design principles. Journal of Experimental Botany, 60(13), 3615-35. Energy Biosciences Institute, University of California, Berkeley, CA 94720, USA. doi:erp245 [pii] 10.1093/jxb/erp245 - Report Number: LBNL-ir:156258
Characterization of the primary cell walls of seedlings of Brachypodium distachyon - A potential model plant for temperate grasses
Christensen, U., Alonso-Simon, A., Scheller, H. V., Willats, W. G. T., & Harholt, J. (2010). Characterization of the primary cell walls of seedlings of Brachypodium distachyon - A potential model plant for temperate grasses. Phytochemistry, 71(1), 62-69. Harholt, J Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Ctr ProAct Plants, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Ctr ProAct Plants, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Ctr ProAct Plants, DK-1871 Frederiksberg C, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Mol Biol, VKR Ctr ProAct Plants, DK-2200 Copenhagen, Denmark Joint BioEnergy Inst, Lawrence Berkeley Natl Lab, Feedstocks Div, Emeryville, CA 94608 USA. doi:10.1016/J.Phytochem.2009.09.019 - Report Number: LBNL-ir:156114
A cytoplasmically inherited barley mutant is defective in photosystem I assembly due to a temperature-sensitive defect in ycf3 splicing
Landau, A. M., Lokstein, H., Scheller, H. V., Lainez, V., Maldonado, S., & Prina, A. R. (2009). A cytoplasmically inherited barley mutant is defective in photosystem I assembly due to a temperature-sensitive defect in ycf3 splicing. Plant Physiology, 151, 1802-11. Instituto de Gene´tica E.A. Favret, Centro de Investigaciones en Ciencias Veterinarias y Agrono´micas, Instituto Nacional de Tecnologı´a Agropecuaria, B1712WAA Castelar, Province of Buenos Aires, Argentina (A.M.L., A.R.P.); Institut fu¨ r Biochemie und Biologie, Universita¨ t Potsdam, D–14476 Potsdam-Golm, Germany (H.L.); Department of Plant Biology and Biotechnology, University of Copenhagen, DK–1871 Frederiksberg C, Denmark (H.V.S.); Joint Bioenergy Institute, Emeryville, California 94608 (H.V.S.); Consejo Nacional de Investigaciones Cientı´ficas y Te´cnicas, Departamento de Biodiversidad y Biologı´a Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, C1428EGA Buenos Aires, Argentina (V.L., S.M.); and Instituto de Recursos Biolo´ gicos, Centro de Investigacio´n de Recursos Naturales, Instituto Nacional de Tecnologı´a Agropecuaria, B1712WAA Castelar, Province of Buenos Aires, Argentina (S.M.). doi:10.1104/pp.109.147843 - Report Number: LBNL-ir:156192
Assay and heterologous expression in Pichia pastoris of plant cell wall type-II membrane anchored glycosyltransferases
Petersen, B. L., Egelund, J., Damager, I., Faber, K., Jensen, J. K., Yang, Z., … Ulvskov, P. (2009). Assay and heterologous expression in Pichia pastoris of plant cell wall type-II membrane anchored glycosyltransferases. Glycoconjugate Journal , 26(9), 1235-46. Cell Wall Biology and Molecular Plant Virology, Institute of Genetics and Biotechnology, Faculty of Agricultural Sciences, University of Aarhus and Centre for Pro-Active Plants (VKR), Thorvaldsensvej 40, Frederiksberg, 1871, Denmark. b.petersen@dias.kvl.dk. doi:10.1007/s10719-009-9242-0 - Report Number: LBNL-ir:156239
Exploring the effect of different plant lignin content and composition on ionic liquid pretreatment efficiency and enzymatic saccharification of Eucalyptus globulus L. mutants
Papa, G., Varanasi, P., Sun, L., Cheng, G., Stavila, V., Holmes, B., … Singh, S. (2012). Exploring the effect of different plant lignin content and composition on ionic liquid pretreatment efficiency and enzymatic saccharification of Eucalyptus globulus L. mutants. Bioresour Technol, 117, 352-9. Gruppo Ricicla, Dipartimento di Produzione Vegetale, Universita degli Studi di Milano, Via Celoria 2, 20133 Milano, Italy. doi:10.1016/j.biortech.2012.04.065 - Report Number: LBNL-ir:156227
Transcription Factor-Based Screens and Synthetic Selections for Microbial Small-Molecule Biosynthesis
Dietrich, J. A., Shis, D. L., Alikhani, A., & Keasling, J. D. (2012). Transcription Factor-Based Screens and Synthetic Selections for Microbial Small-Molecule Biosynthesis. ACS Synthetic Biology. doi:10.1021/sb300091d - Report Number: LBNL-ir:156129

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